Re-run this search with the SEG filter switched off
Re-run this search as BLASTX i.e. nucleotide query
NOTE: 4 genes in the same pillar as NDAI0A00190 were not hit in these BLAST resultsBLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= NDAI0A00190
(171 letters)
Database: Seq/AA.fsa
114,666 sequences; 53,481,399 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
NDAI0A00190 Chr1 complement(17031..17546) [516 bp, 171 aa] {ON} ... 336 e-119
ZYRO0F18370g Chr6 (1518178..1518840) [663 bp, 220 aa] {ON} conse... 165 2e-51
TDEL0C06930 Chr3 (1260938..1261492) [555 bp, 184 aa] {ON} Anc_1.... 144 2e-43
NCAS0B09060 Chr2 (1741161..1741664) [504 bp, 167 aa] {ON} Anc_1.... 142 5e-43
KNAG0C00270 Chr3 complement(41823..42347) [525 bp, 174 aa] {ON} ... 134 5e-40
SAKL0C00572g Chr3 complement(51031..52047) [1017 bp, 338 aa] {ON... 129 3e-36
KAFR0D00190 Chr4 complement(21149..21706) [558 bp, 185 aa] {ON} ... 115 2e-32
TPHA0E03960 Chr5 (833382..833915) [534 bp, 177 aa] {ON} Anc_1.10... 105 2e-28
KLTH0F00572g Chr6 complement(42946..43533) [588 bp, 195 aa] {ON}... 99 6e-26
Kwal_33.13023 s33 complement(43697..44278) [582 bp, 193 aa] {ON}... 97 4e-25
KLLA0C00594g Chr3 complement(44220..44804) [585 bp, 194 aa] {ON}... 94 1e-23
TBLA0A04970 Chr1 complement(1220824..1221369) [546 bp, 181 aa] {... 69 2e-14
Kpol_2002.13 s2002 complement(23954..24448) [495 bp, 164 aa] {ON... 61 2e-11
Ecym_1012 Chr1 complement(22226..22759) [534 bp, 177 aa] {ON} si... 59 1e-10
TDEL0B05910 Chr2 complement(1045851..1047401) [1551 bp, 516 aa] ... 30 2.4
Kpol_1062.1 s1062 complement(1522..3942) [2421 bp, 806 aa] {ON} ... 30 2.8
>NDAI0A00190 Chr1 complement(17031..17546) [516 bp, 171 aa] {ON}
Anc_1.10 YCL056C
Length = 171
Score = 336 bits (861), Expect = e-119, Method: Compositional matrix adjust. Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MRRTMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTT 60
MRRTMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTT
Sbjct: 1 MRRTMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTT 60
Query: 61 RKLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLEL 120
RKLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLEL
Sbjct: 61 RKLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLEL 120
Query: 121 FQTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSAKSNGEVLAI 171
FQTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSAKSNGEVLAI
Sbjct: 121 FQTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSAKSNGEVLAI 171
>ZYRO0F18370g Chr6 (1518178..1518840) [663 bp, 220 aa] {ON}
conserved hypothetical protein
Length = 220
Score = 165 bits (418), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
T ED++I GLE IC +FDNVYLLK+LGIISE+NLLYR LNKG +GSK+WFVTL+L+ RK
Sbjct: 56 TFEDTLIAGLESICGLFDNVYLLKTLGIISEDNLLYRRLNKGEWGSKLWFVTLLLSARKS 115
Query: 64 VHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQT 123
+L++ +KA+ +L KE R +E+LV VL K +KKCS +I D++LEL QT
Sbjct: 116 FSRLLKIMKAKSKL-KEEMKELRTEGDEDLVKQVLRNKFTDALKKCSIIIKDVVLELLQT 174
Query: 124 LVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSA 162
L YL +V I +FK+ S K++ +LE LS+ + +IR+F+
Sbjct: 175 LAYLAIVVIEVFKINVSQKVIKILEPLSHFIAVIRIFTT 213
>TDEL0C06930 Chr3 (1260938..1261492) [555 bp, 184 aa] {ON} Anc_1.10
YCL056C
Length = 184
Score = 144 bits (362), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 2 RRTMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTR 61
+ + ED++I GLE +C+ FDNVY KSLGII ENN LYR LNKG +GSK+WFVTL+L+ R
Sbjct: 19 KTSFEDNLIAGLESVCSFFDNVYFAKSLGIIGENNFLYRRLNKGGWGSKLWFVTLLLSVR 78
Query: 62 KLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELF 121
K + Q+ + V+ RIRL E K + + L++ VL EK+ + ++K ++M+ + LL+L
Sbjct: 79 KCLRQIFQIVRNRIRLKTEIKGMDK--NGKGLMNDVLKEKILLMLQKSNAMMRETLLDLL 136
Query: 122 QTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFS 161
Q VYL +V I++FKL + +LE LSN + ++R F+
Sbjct: 137 QNSVYLMIVVIDVFKLNIPKRARQILEPLSNFVTIMRFFT 176
>NCAS0B09060 Chr2 (1741161..1741664) [504 bp, 167 aa] {ON} Anc_1.10
YCL056C
Length = 167
Score = 142 bits (358), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 5 MEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKLV 64
+ED+++ LE ICNIFDNVY KS+G++SE N+LYR LNKG+FGSK+WF+TL+L+++KL+
Sbjct: 4 LEDNVLNALESICNIFDNVYFFKSIGVLSEKNILYRTLNKGDFGSKLWFLTLLLSSKKLI 63
Query: 65 HQLIRAVKARIRLVKE-RKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQT 123
+L +++K R ++ KE ++ K +++LV+S+L EKL++ + KC +I + +LEL QT
Sbjct: 64 TRLTKSLKIRAKIKKEIDESPKENDEDKSLVNSLLREKLELSLAKCMDIIRNNVLELLQT 123
Query: 124 LVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMF 160
++YL + IN+FK+K K ++LE LSN++ +IR+F
Sbjct: 124 MMYLSIAFINVFKVKVPQKWKHLLEQLSNIITIIRVF 160
>KNAG0C00270 Chr3 complement(41823..42347) [525 bp, 174 aa] {ON}
Anc_1.10 YCL056C
Length = 174
Score = 134 bits (338), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
+ ED ++G LE IC+IFDN+YLLKSLGIIS+ N LYR LNKGN GSK+WF+TLIL+ RK
Sbjct: 8 SWEDVLLGKLESICSIFDNIYLLKSLGIISKENFLYRKLNKGNVGSKVWFLTLILSIRKN 67
Query: 64 VHQLIRAVKARIRLVKERKNSKRITR-NENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQ 122
+ +L+R V+ R +LV E + R + +++LV++V+ KL ++KC MI+D L+L Q
Sbjct: 68 LKRLVRLVQTRFKLVFEIEQILRQKKLDDSLVNNVVLNKLSTNLRKCHFMIIDTFLDLAQ 127
Query: 123 TLVYLFLVSINIFKLKFS-DKMVYVLEHLSNLLVLIRM 159
L+YLF+VS + F + K L +SN++ ++RM
Sbjct: 128 LLIYLFIVSGDCFNIPPRFKKFKKYLGPMSNVVTILRM 165
>SAKL0C00572g Chr3 complement(51031..52047) [1017 bp, 338 aa] {ON}
conserved hypothetical protein
Length = 338
Score = 129 bits (325), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
+ ED +IGGLE + N+FD+VYLLK+ GII E N +YR+LNKG GSK+W TL+L+ RK
Sbjct: 175 SFEDILIGGLESLTNVFDDVYLLKNFGIIGETNFVYRHLNKGGLGSKLWLATLVLSLRKS 234
Query: 64 VHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQT 123
+ QL R +AR L KER+++ + + ++ +K I + I D+LL++ Q
Sbjct: 235 LGQLFRLARARHMLQKERRSTPH--KCSKTFAKIIADKFTQKIGQLDRQIKDVLLDVLQN 292
Query: 124 LVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMF 160
L YL +V++++FKLK + +LE +S+L+ + R F
Sbjct: 293 LAYLLVVAVDVFKLKLPHRWRRLLEWVSSLVTVSRFF 329
>KAFR0D00190 Chr4 complement(21149..21706) [558 bp, 185 aa] {ON}
Anc_1.10 YCL056C
Length = 185
Score = 115 bits (289), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 6/167 (3%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
T+ED +I LE IC +FDN+Y LK+LG+I E+N +Y+ LNKGN GSKIW V+LIL+ R+
Sbjct: 18 TLEDILIDKLEGICTVFDNIYFLKNLGVIKEDNFIYKKLNKGNLGSKIWLVSLILSIRRC 77
Query: 64 VHQLIRAVKARIRLVKERK--NSKRITRNEN-LVSSVLHEKLDIGIKKCSSMIMDLLLEL 120
L + R + V E + KR +EN LV+ +L +KL ++KC+S+I DLLLE
Sbjct: 78 FKNLTHMYRTRRKYVTELSIVSKKRNQSSENGLVNGILKDKLLQSLQKCNSIIRDLLLEF 137
Query: 121 FQTLVYLFLVSINIFKLKFSDKMVYV---LEHLSNLLVLIRMFSAKS 164
Q L+YL +V I +FK+K ++ V LE LSNL+ + R+ +A S
Sbjct: 138 LQVLLYLIIVIIEVFKVKSLERYVKGIRNLEILSNLITVTRIITATS 184
>TPHA0E03960 Chr5 (833382..833915) [534 bp, 177 aa] {ON} Anc_1.10
YCL056C
Length = 177
Score = 105 bits (261), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 5 MEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKLV 64
E +++ LE I NIFD V+ L+S G+I ENN YRNLN+ N GSKIWFVTLIL+ RKL
Sbjct: 17 FESTLLNYLESITNIFDLVFFLRSTGLIKENNFFYRNLNRSNIGSKIWFVTLILSIRKLY 76
Query: 65 HQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQTL 124
++++ K L E +I +N +L S ++ +K+ I + ++EL Q
Sbjct: 77 KNILKSTKLLSLLKTEL---TKIEKNNDLTSDIILQKIQNNNTILKKKIKNFIIELIQDF 133
Query: 125 VYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFS 161
+YL +VS+ IFK+ S K+ + LE LSN + +++ F+
Sbjct: 134 IYLIIVSLEIFKISISKKLNHRLEILSNSVSMLKFFT 170
>KLTH0F00572g Chr6 complement(42946..43533) [588 bp, 195 aa] {ON}
conserved hypothetical protein
Length = 195
Score = 99.4 bits (246), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 3 RTMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRK 62
+ +E +++ GLE I IFD++ LL+S G+I ENN+ Y+ LNK F SK W V+L L++R+
Sbjct: 31 KNIESALVSGLETIAGIFDDLQLLRSFGVIGENNVFYQKLNKSGFCSKAWLVSLTLSSRR 90
Query: 63 LVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQ 122
+I +R RL +E+ R R N V VL+ K+ I++ + ++ + LEL Q
Sbjct: 91 NASDIINLAISRSRLKREQAEFMR--RPVNPVRKVLNAKVTARIQEINQKLILVALELIQ 148
Query: 123 TLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRM 159
+ YL LV+ ++ ++K +LE +S++ + R+
Sbjct: 149 NIGYLTLVAADVLAFGLTEKWKRLLERVSSIFAIARL 185
>Kwal_33.13023 s33 complement(43697..44278) [582 bp, 193 aa] {ON}
[contig 123] FULL
Length = 193
Score = 97.1 bits (240), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 94/155 (60%), Gaps = 2/155 (1%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
+E+ I G+E + +FD+++LLKS GIISE+N +YR LNK F SK+W ++L+L+TRK
Sbjct: 32 AIENFCISGMESVAGLFDDIHLLKSFGIISESNYVYRKLNKSGFCSKVWLLSLVLSTRKC 91
Query: 64 VHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQT 123
+ L +R RL KE + + N + L +K+ + IK + ++ + LE+ Q
Sbjct: 92 IRDLNNLWMSRSRLRKEEVHF--TMHSSNSLRRALSDKIALKIKDVNRRLILVALEIMQN 149
Query: 124 LVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIR 158
+ YL +V+ ++F L ++ +LE S+LL +++
Sbjct: 150 IAYLIIVAADVFTLNLVERWKNLLEKCSSLLTVLK 184
>KLLA0C00594g Chr3 complement(44220..44804) [585 bp, 194 aa] {ON}
conserved hypothetical protein
Length = 194
Score = 93.6 bits (231), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 8/162 (4%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKL 63
++ED +I L + + FD++YLL+S GIIS+ N LY+ LNKG+ GSK+W V+L+L+ R+
Sbjct: 32 SLEDLLIDSLTSVSSFFDDLYLLRSFGIISDTNFLYQKLNKGDIGSKVWLVSLLLSIRRS 91
Query: 64 VHQLIRAVKARIRLVKERKN--SKRITRNENLV-SSVLHEKLDIGIKKCSSMIMDLLLEL 120
+ +L ++ +++L KE N S + LV +L E + +K I L ++L
Sbjct: 92 LTRLYTLIRLKLKLRKECMNIASTYSPGFKKLVKEKILAESNQLSLK-----IRSLCMDL 146
Query: 121 FQTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSA 162
Q L+Y+ +VSI+IFK+ S K LE +S+ +++ S+
Sbjct: 147 LQDLLYMIIVSIDIFKINLSLKFKRALELISSAATVLKFVSS 188
>TBLA0A04970 Chr1 complement(1220824..1221369) [546 bp, 181 aa]
{ON} Anc_1.10 YCL056C
Length = 181
Score = 69.3 bits (168), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 8 SIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTR 61
I+ GLE IC++FDN+Y L+S+G+IS+ NL YR LN+ GSKIW +TL+L R
Sbjct: 12 DILYGLESICSVFDNIYFLRSIGLISDTNLFYRLLNRSELGSKIWLITLVLNIR 65
>Kpol_2002.13 s2002 complement(23954..24448) [495 bp, 164 aa] {ON}
complement(23954..24448) [495 nt, 165 aa]
Length = 164
Score = 60.8 bits (146), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 5/157 (3%)
Query: 6 EDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKGNFGSKIWFVTLILTTRKLVH 65
ED ++ GLE IC++FD++Y +K+LGII++ + LYR + + NF K+W TL+L +KLV
Sbjct: 7 EDIVLDGLEGICSLFDSIYFIKTLGIITDKSFLYRKIIQNNFSLKLWLATLLLIIKKLVV 66
Query: 66 QLIRAVKA----RIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELF 121
+L + K +I L K+ N+ N ++S+L EKL+ I + + I LL+L
Sbjct: 67 KLFQNYKILRFLKIEL-KQHINNNNNNNKNNHINSILLEKLNKKINQHYNFIKLNLLDLI 125
Query: 122 QTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIR 158
Q L+Y +V I + KLK S K ++LE L+N + +++
Sbjct: 126 QNLLYCAIVIIELLKLKISKKSKFILELLANSITIVK 162
>Ecym_1012 Chr1 complement(22226..22759) [534 bp, 177 aa] {ON}
similar to XP_452220 - K. lactis - KLLA0C00594g
Length = 177
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 4 TMEDSIIGGLEYICNIFDNVYLLKSLGIISENNLLYRNLNKG--NFGSKIWFVTLILTTR 61
T ED + L +D +YL +S+GII ++N++Y+ L G N GS++ F L+L R
Sbjct: 32 TFEDQLTENLRSAVTFYDLIYLFQSIGIIKKDNVIYKALAVGKINSGSRLLF--LLLVAR 89
Query: 62 KLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELF 121
K +L+R V RL KN L + + +K + + I+ L ++L
Sbjct: 90 KTFLKLLRLV----RLWYALKNV--------LPPASIKKKYNETKSRVKRSILRLSVDLL 137
Query: 122 QTLVYLFLVSINIFKLKFSD 141
TLVYL +V I++FK K SD
Sbjct: 138 DTLVYLIVVLIDLFKFKVSD 157
>TDEL0B05910 Chr2 complement(1045851..1047401) [1551 bp, 516 aa]
{ON} Anc_1.415 YCL004W
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 VHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLELFQT 123
+HQLI + ++RL + N+NL +H+K+ IK S+++ LL+ Q
Sbjct: 222 LHQLISGLSYKVRLATNEQKFSIFWPNQNLAVEPVHDKVKF-IKNASTVLRKFLLKEPQP 280
Query: 124 LV 125
++
Sbjct: 281 II 282
>Kpol_1062.1 s1062 complement(1522..3942) [2421 bp, 806 aa] {ON}
complement(1522..3942) [2421 nt, 807 aa]
Length = 806
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust. Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 7 DSIIGGLEYICNIFDNVYLLKSLGIIS------ENNLLYRNLNKGNFGSKIWFVTLILTT 60
D++ L+Y I+D Y+++ G++ E+ LLY+ +L T
Sbjct: 308 DNVASSLKYDDRIWDTQYVVRKDGLLDVFSTSEESALLYK----------------VLMT 351
Query: 61 RKLVHQLIRAVKARIRLVKERKNSKRITRNENLVSSVLHEKLDIGIKKCSSMIMDLLLEL 120
KL++ +I+ +RL E + E + S+ L +D + + + +D+ L
Sbjct: 352 GKLLN-IIKKSYGIVRLPTEELADDVPSFVELMESTNLELYIDKWYNRANQLCLDMYLRD 410
Query: 121 FQTLVYLFLVSINIFKLKFSDKMVYVLEHLSNLLVLIRMFSAKSNGEVLAI 171
+ + +L L+ + F ++ + L+ N++ L R + SN +VL +
Sbjct: 411 YDLIKFLKLLQKHFFSYHNANNLYKFLQ--KNMIELTRHYKGTSNNQVLKL 459
Database: Seq/AA.fsa
Posted date: Aug 24, 2012 3:22 PM
Number of letters in database: 53,481,399
Number of sequences in database: 114,666
Lambda K H
0.327 0.142 0.390
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 114666 Number of Hits to DB: 16,718,585 Number of extensions: 666650 Number of successful extensions: 3116 Number of sequences better than 10.0: 39 Number of HSP's gapped: 3153 Number of HSP's successfully gapped: 39 Length of query: 171 Length of database: 53,481,399 Length adjustment: 102 Effective length of query: 69 Effective length of database: 41,785,467 Effective search space: 2883197223 Effective search space used: 2883197223 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 61 (28.1 bits)